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TVIS30005162
Basic Information
VIS ID
TVIS30005162
Fusion event
HIV-RBBP4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.1
Reference genome
GRCh37/hg19
Start
33123782/32658181 (Hg38)
End
33123782/32658181 (Hg38)
Orient
+
Location type
Intronic
Target gene
RBBP4
miRNAs that regulate target gene
hsa-mir-18a-3p
;
hsa-mir-423-3p
;
hsa-mir-324-5p
;
hsa-let-7e-5p
;
hsa-mir-429
;
hsa-mir-6868-3p
;
hsa-mir-664b-3p
;
hsa-mir-579-3p
;
hsa-mir-5696
;
hsa-mir-4766-3p
;
hsa-mir-4252
;
hsa-mir-6734-3p
;
hsa-mir-3667-3p
;
hsa-mir-3908
;
hsa-mir-205-5p
;
hsa-mir-4703-5p
;
hsa-mir-3942-5p
;
hsa-mir-1183
;
hsa-mir-500a-5p
;
hsa-mir-8070
;
hsa-mir-3187-3p
;
hsa-mir-4435
;
hsa-mir-588
;
hsa-mir-4701-5p
;
hsa-mir-548s
;
hsa-mir-640
;
hsa-mir-203b-3p
;
hsa-mir-7158-3p
;
hsa-mir-378a-5p
;
hsa-mir-6131
;
hsa-mir-4755-3p
;
hsa-mir-6759-3p
;
hsa-mir-4680-5p
;
hsa-mir-4635
;
hsa-mir-3663-5p
;
hsa-mir-3653-5p
;
hsa-mir-6767-3p
;
hsa-mir-5092
;
hsa-mir-6513-5p
;
hsa-mir-887-5p
;
hsa-mir-3913-5p
;
hsa-mir-3122
;
hsa-mir-450a-1-3p
;
hsa-mir-6780a-5p
;
hsa-mir-6779-5p
;
hsa-mir-3689c
;
hsa-mir-3689b-3p
;
hsa-mir-3689a-3p
;
hsa-mir-30b-3p
;
hsa-mir-1273h-5p
;
hsa-mir-6788-5p
;
hsa-mir-30c-2-3p
;
hsa-mir-30c-1-3p
;
hsa-mir-7977
;
hsa-mir-8085
;
hsa-mir-6731-5p
;
hsa-mir-6878-5p
;
hsa-mir-24-3p
;
hsa-mir-4284
;
hsa-mir-342-3p
;
hsa-mir-5693
;
hsa-mir-383-3p
;
hsa-mir-3681-3p
;
hsa-mir-216a-3p
;
hsa-mir-128-3p
;
hsa-mir-1228-3p
;
hsa-mir-129-5p
;
hsa-mir-8055
;
hsa-mir-744-3p
;
hsa-mir-6805-3p
;
hsa-mir-5691
;
hsa-mir-5006-5p
;
hsa-mir-3972
;
hsa-mir-1202
;
hsa-mir-3672
;
hsa-mir-6864-3p
;
hsa-mir-4423-5p
;
hsa-mir-6501-5p
;
hsa-mir-431-5p
;
hsa-mir-4294
;
hsa-mir-3194-3p
;
hsa-mir-924
;
hsa-mir-367-5p
;
hsa-mir-1267
Nearest miRNA
hsa-mir-12136/Upstream/571174; hsa-mir-101-1/Downstream/674212;
Nearest TSS
ENST00000473358/Upstream/6694;
ENST00000531983/Downstream/10138;
Nearest CpG islands
None/Target,
chr1-CpG: 111/Upstream/6419
,
chr1-CpG: 86/Downstream/44237
Upstream sequence
acctcaggtgatccacccacctcagcctctcagagtgctggaattacaggcgtgagccactgcacccATCCATATTGCTatacattcttaacacgggaga
Downstream sequence
taactacccctaaggaggtgaaaattggtttgtgtatgtgagtaggtgtaaataatcttactggttgattgtttaaagcacagatatgcacagaggacat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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