VISDB Viral Integration Site DataBase

VIS ID

TVIS30005163

Fusion event

HIV-AK2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p35.1

Reference genome

Start

End

33493451/33027850 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-98-5p ; hsa-mir-30a-5p ; hsa-mir-16-5p ; hsa-mir-320a ; hsa-mir-193a-3p ; hsa-mir-92a-3p ; hsa-mir-6807-5p ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6873-5p ; hsa-mir-6858-5p ; hsa-mir-6779-5p ; hsa-mir-4710 ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-6081 ; hsa-mir-149-3p ; hsa-mir-298 ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-4468 ; hsa-mir-4795-5p ; hsa-mir-4793-3p ; hsa-mir-3130-3p ; hsa-mir-125a-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-5197-3p ; hsa-mir-552-3p ; hsa-mir-3978 ; hsa-mir-580-3p ; hsa-mir-513a-5p ; hsa-mir-4704-3p ; hsa-mir-8080 ; hsa-mir-3688-3p ; hsa-mir-653-5p ; hsa-mir-6883-3p ; hsa-mir-454-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-3679-3p ; hsa-mir-587 ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-1298-5p ; hsa-mir-6778-3p ; hsa-mir-7515 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6734-3p ; hsa-mir-6832-3p ; hsa-mir-6887-3p ; hsa-mir-3938 ; hsa-mir-34a-3p

Nearest miRNA

hsa-mir-12136/Upstream/940843; hsa-mir-101-1/Downstream/304543;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/54472, chr1-CpG: 40/Downstream/8750

Upstream sequence

aaaaaaaaaaaaaagaaaaagaaaaaaAGAAAACGAATTCCTTCATTTCCTGCTGGCTGCCTgggagtcaatgtggtaggctgtaaagagcacgcatggg

Downstream sequence

ttttgaagtcagacagatttacacttgattcctagctaaggcactcagtagccgtgtgatcttgggctaagtacttaacttctcagagtgtcagtttcct