Basic Information
VIS ID
TVIS30005166
Fusion event
HIV-LOC105378642 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
35242146/34776545 (Hg38)
End
35242146/34776545 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105378642
Nearest miRNA
hsa-mir-12136/Upstream/106851; hsa-mir-101-1/Downstream/2385018;
Nearest TSS
ENST00000473358/Upstream/16804; ENST00000373366/Downstream/4644;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/14870, chr1-CpG: 61/Downstream/4730
Nearby gene
GJB3(No orient, 4644)
Upstream sequence
ggactttgacaagagcagttttggtgtcatataggaagctaaagcttgattagagtaagttcaagagaagatgaaagagaaaaaatggagataatgaatc
Downstream sequence
aggacaagtctttggatagattttgctgtaaaggagtggaaagaaatgaggcagatgctggaaggagaagtggggttcaggttaaggtgtcttgttgttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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