VISDB Viral Integration Site DataBase

VIS ID

TVIS30005167

Fusion event

HIV-ZMYM1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

35552360/35086759 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-4722-5p ; hsa-mir-25-5p ; hsa-mir-4649-3p ; hsa-mir-1827 ; hsa-mir-6125 ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4531 ; hsa-mir-4516 ; hsa-mir-5703 ; hsa-mir-4434 ; hsa-mir-3135b ; hsa-mir-539-5p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-1207-3p ; hsa-mir-3919 ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-197-3p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-483-5p ; hsa-mir-7153-3p ; hsa-mir-4668-5p ; hsa-mir-7977 ; hsa-mir-3178 ; hsa-mir-24-3p ; hsa-mir-6499-5p ; hsa-mir-6768-3p ; hsa-mir-4279 ; hsa-mir-2355-5p ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-122-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-1286 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6729-3p ; hsa-mir-5000-3p ; hsa-mir-5690 ; hsa-mir-4436a ; hsa-mir-4705 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4459 ; hsa-mir-658 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6087 ; hsa-mir-4537 ; hsa-mir-3192-5p ; hsa-mir-487a-3p ; hsa-mir-154-3p ; hsa-mir-5694 ; hsa-mir-7851-3p ; hsa-mir-490-3p

Nearest miRNA

hsa-mir-12136/Upstream/417065; hsa-mir-101-1/Downstream/2074804;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/7057, chr1-CpG: 25/Downstream/33971

Upstream sequence

AATTTTTTTTTCAATTAAAAAAttctttttttttcttttgagatgcagtttcgcactgtcacccaggcttgagcgacagtgagcttgatctcagctcact

Downstream sequence

acatcctccacctcctgggtttaagcaattctctgcctcagcctcccgagtagcagggattacaggcgcccaccaccacgcttggctaattttttttgta