Basic Information
VIS ID
TVIS30005185
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
37954050/37488449 (Hg38)
End
37954050/37488449 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/8160; hsa-mir-101-1/Downstream/12486;
Nearest TSS
ENST00000473358/Upstream/6759; ENST00000490312/Downstream/25071;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/13829, chr1-CpG: 71/Downstream/25862
Nearby gene
MEAF6(No orient, 1511)
Upstream sequence
tttgtagaaacagggtcttactttgttgcccaggctagtcttgaactcctgggctcaagcgatcctcccatcatggcctcccaccatcctcctgccttgg
Downstream sequence
cctcccaaagtgctgggattacaggcatgagccagcatgcctggccTcactgctgagaatttaccctacaagtactcttacttgcaaaattatgcatcta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate