Basic Information
VIS ID
TVIS30005186
Fusion event
HIV-CDCA8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
38169190/37703518 (Hg38)
End
38169190/37703518 (Hg38)
Orient
-
Location type
Intronic
Target gene
CDCA8
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-23b-3p ; hsa-mir-4641 ; hsa-mir-371b-3p ; hsa-mir-188-3p ; hsa-mir-6880-5p ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-6077 ; hsa-mir-4721 ; hsa-mir-133a-5p ; hsa-mir-532-3p ; hsa-mir-4459 ; hsa-mir-140-3p ; hsa-mir-4779 ; hsa-mir-4446-3p ; hsa-mir-3127-5p ; hsa-mir-6823-5p ; hsa-mir-6507-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n
Nearest miRNA
hsa-mir-12136/Upstream/202524; hsa-mir-101-1/Downstream/385713;
Nearest TSS
ENST00000473358/Upstream/11037; ENST00000532512/Downstream/11502;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/10604, chr1-CpG: 93/Downstream/49000
Upstream sequence
AAGAAAATACTCCTAggccaggcacggtagctcacgcctgtaataccagcactttgagaggccgaggcaggcggatcacttgaggtcaggagttcaagac
Downstream sequence
cagcctggccaagatgatgaaacgctgcgtctactaaaaatacaaaaattagttgggtgtggtggtgcacgcctgtaatcccagctactcaggaggctga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate