VISDB Viral Integration Site DataBase

VIS ID

TVIS30005188

Fusion event

HIV-AKIRIN1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

39462581/38996909 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-331-3p ; hsa-mir-3662 ; hsa-mir-27a-3p ; hsa-mir-224-5p ; hsa-mir-27b-3p ; hsa-mir-513a-5p ; hsa-mir-545-5p ; hsa-mir-16-1-3p ; hsa-mir-144-3p ; hsa-mir-605-3p ; hsa-mir-3653-3p ; hsa-mir-3658 ; hsa-mir-4477a ; hsa-mir-6809-5p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-568 ; hsa-mir-1297 ; hsa-mir-4465 ; hsa-mir-4694-3p ; hsa-mir-3613-3p ; hsa-mir-1257 ; hsa-mir-4792 ; hsa-mir-6818-5p ; hsa-mir-7854-3p ; hsa-mir-1207-3p ; hsa-mir-3910 ; hsa-mir-646 ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30e-5p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-3140-5p ; hsa-mir-6882-5p ; hsa-mir-1306-5p ; hsa-mir-147a ; hsa-mir-6134 ; hsa-mir-339-3p ; hsa-mir-6825-3p ; hsa-mir-6793-3p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-4535 ; hsa-mir-2117 ; hsa-mir-659-5p ; hsa-mir-6861-3p ; hsa-mir-492 ; hsa-mir-298 ; hsa-mir-3158-5p ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-4255 ; hsa-mir-595 ; hsa-mir-5089-5p ; hsa-mir-4279 ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6814-5p ; hsa-mir-6823-5p ; hsa-mir-6513-3p ; hsa-mir-8062 ; hsa-mir-150-5p

Nearest miRNA

hsa-mir-12136/Upstream/907580; hsa-mir-101-1/Downstream/1757446;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/5310, chr1-CpG: 142/Downstream/84058

Upstream sequence

taagccaccatacccagcTGGCCCATAACACTCTTAAAGCATCTCCTACATTGTTCTAGTATTTAGGCTGAAAGTTAGGGACTTTGACTATGTGTGGAAC

Downstream sequence

CACTTGAATTCATGTCAGTTCCTGGactgtactgtcacttgttatgacattattgttacctttagtttttatttttacaaccttatcaggtaggtattta