Basic Information
VIS ID
TVIS30005195
Fusion event
HIV-PPIEL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
39999261/39533589 (Hg38)
End
39999261/39533589 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
PPIEL
Nearest miRNA
hsa-mir-12136/Upstream/1444260; hsa-mir-101-1/Downstream/1220766;
Nearest TSS
ENST00000473358/Upstream/41943; ENST00000415255/Downstream/28421;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/17493, chr1-CpG: 117/Downstream/42056
Upstream sequence
ttttttagaagagtcttgctctgttgtccaggctggagtgcaatggtgcagtcacagctGtctacaaaaatattttttaaaattagccaggtgtggtggt
Downstream sequence
gtgtgcctatagttccaactagttgtaaagctgaaacataaggaccacttgggtacaggagttccaagactgtggtgagctgtgattgcaccactgcact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate