Basic Information
VIS ID
TVIS30005196
Fusion event
HIV-PPIE integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37/hg19
Start
40212023/39746351 (Hg38)
End
40212023/39746351 (Hg38)
Orient
+
Location type
Intronic
Target gene
PPIE
miRNAs that regulate target gene
hsa-mir-766-3p ; hsa-mir-324-3p ; hsa-mir-342-3p ; hsa-mir-4460 ; hsa-mir-6778-3p ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-660-3p ; hsa-mir-140-5p ; hsa-mir-6718-5p ; hsa-mir-203b-5p ; hsa-mir-1976
Nearest miRNA
hsa-mir-12136/Upstream/1657022; hsa-mir-101-1/Downstream/1008004;
Nearest TSS
ENST00000473358/Upstream/7361; ENST00000467741/Downstream/14848;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/7284, chr1-CpG: 126/Downstream/23744
Upstream sequence
tcatgtgataacctcctttcatgcacagcattttgttttgcctggaattgataattgccttgtttttgcatagttttctgtgtaatcattcctgattttc
Downstream sequence
tcccagaccatccTGCTGGGGGTTTTGCATCCAGGTGTCTGCATCTTGTTAAGgggagatgagggcaaggctgaattcctcaacattcagtatataaact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate