Basic Information
VIS ID
TVIS30005198
Fusion event
HIV-ZMPSTE24 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37/hg19
Start
40733672/40268000 (Hg38)
End
40733672/40268000 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZMPSTE24
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-124-3p ; hsa-mir-141-3p ; hsa-mir-1305 ; hsa-mir-30a-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-3973 ; hsa-mir-4686 ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-548a-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548b-5p ; hsa-mir-548bb-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548j-5p ; hsa-mir-548o-5p ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-559 ; hsa-mir-607
Nearest miRNA
hsa-mir-12136/Upstream/2178671; hsa-mir-101-1/Downstream/486355;
Nearest TSS
ENST00000473358/Upstream/9761; ENST00000474142/Downstream/22645;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/9662, chr1-CpG: 60/Downstream/35514
Upstream sequence
ATGGTATTTCTTTTAGCTTGGCAGGCTTTCCACTAAAGTTAATTTTTTGGCTTCTGCCAATGTTAAGATTTGCCTCTCTGTTTGCATAGTCCTTGGTTAC
Downstream sequence
CCATGCTGTATTGGCAtaacattagttacaataacaaatcccagaatatcacaggcttatttgcaatggtttatttctcaatcacgtaatagtccagtgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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