Basic Information
VIS ID
TVIS30005208
Fusion event
HIV-ST3GAL3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.1
Reference genome
GRCh37/hg19
Start
44310005/43844333 (Hg38)
End
44310005/43844333 (Hg38)
Orient
+
Location type
Intronic
Target gene
ST3GAL3
Nearest miRNA
hsa-mir-12136/Upstream/5650; hsa-mir-101-1/Downstream/701160;
Nearest TSS
ENST00000473358/Upstream/6083; ENST00000647299/Downstream/34911;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/136241, chr1-CpG: 35/Downstream/89063
Upstream sequence
atcattgaccactggtgatcaaatcaaccttcagcccttttcccatccccgaggtcagagggtgagactgaaagttccagccctctaattgcatagttgg
Downstream sequence
ttcccctgccaaccagcacccaacataaggctatccagaagtcatctcatgagaacaaaagatattcctatcacccaggaaatttgaaggaatttagcag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate