VISDB Viral Integration Site DataBase

VIS ID

TVIS30005210

Fusion event

HIV-KIF2C integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.1

Reference genome

Start

End

45213694/44748022 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-423-3p ; hsa-mir-148b-3p ; hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-34a-5p ; hsa-mir-101-3p ; hsa-mir-16-5p ; hsa-mir-92a-3p ; hsa-mir-20a-5p ; hsa-mir-148a-3p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-152-3p ; hsa-mir-186-3p ; hsa-mir-494-3p ; hsa-mir-181d-5p ; hsa-mir-545-5p ; hsa-mir-583 ; hsa-mir-548k ; hsa-mir-3136-3p ; hsa-mir-3154 ; hsa-mir-3162-5p ; hsa-mir-4262 ; hsa-mir-3675-3p ; hsa-mir-4484 ; hsa-mir-4524a-3p ; hsa-mir-4645-3p ; hsa-mir-548av-5p ; hsa-mir-6075 ; hsa-mir-6760-5p ; hsa-mir-6858-3p ; hsa-mir-7155-3p ; hsa-mir-8054 ; hsa-mir-7113-5p ; hsa-mir-142-5p ; hsa-mir-1251-5p ; hsa-mir-517-5p ; hsa-mir-4330 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-548l ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-1303 ; hsa-mir-4276

Nearest miRNA

hsa-mir-12136/Upstream/202470; hsa-mir-101-1/Downstream/6311815;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/7949, chr1-CpG: 75/Downstream/27319

Upstream sequence

AAACCTTTTCTGTAGAATCCAGAGCCTGATGCTGAGGAGAGTAGGAATCAGCCATTGGTAGGCCTTTTTTCTTCCCTCGGGGCTCAGCCCCCTCAGTGGA

Downstream sequence

ACAGTATGCCTTGGAAAGAGATTTTGAAAATGGGAGACACTAGGCCTGTGGGTTGTTTAGAAGTACAGTTGGTGGCGCTATAGAGAGGGATGGCTGGGGC