Basic Information
VIS ID
TVIS30005218
Fusion event
HIV-TESK2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.1
Reference genome
GRCh37/hg19
Start
45828727/45363055 (Hg38)
End
45828727/45363055 (Hg38)
Orient
+
Location type
Intronic
Target gene
TESK2
miRNAs that regulate target gene
hsa-mir-9-5p ; hsa-mir-21-5p ; hsa-mir-93-3p ; hsa-mir-6836-3p ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-6791-3p ; hsa-mir-6829-3p ; hsa-mir-6778-3p ; hsa-mir-1304-3p ; hsa-mir-1247-5p ; hsa-mir-6890-3p ; hsa-mir-4672 ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-6882-3p ; hsa-mir-6768-5p
Nearest miRNA
hsa-mir-12136/Upstream/817503; hsa-mir-101-1/Downstream/5696782;
Nearest TSS
ENST00000473358/Upstream/21759; ENST00000477188/Downstream/94566;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/22744, chr1-CpG: 51/Downstream/127618
Upstream sequence
TAAAAATTGTATGAAAAGGTCAGGAACTGAGGCTGGGAGAAGAGTTAGGATAACCAAGGCCTGAATAAGACAATGGCAGCAAGAATGGAAAGGAGGTTAT
Downstream sequence
TATCTCAGAGACATTAGAGGTAGAATCAGCAAGATTTGGTGTTTGTTCAAAGGCAAGGAGTAATTAAAGAGATAAGGTCTAAATACAAAGTCAGTCCAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate