Basic Information
VIS ID
TVIS30005220
Fusion event
HIV-NASP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.1
Reference genome
GRCh37/hg19
Start
46069813/45604141 (Hg38)
End
46069813/45604141 (Hg38)
Orient
+
Location type
Intronic
Target gene
NASP
miRNAs that regulate target gene
hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-155-5p ; hsa-mir-124-3p ; hsa-mir-34a-5p ; hsa-mir-24-3p ; hsa-mir-93-3p ; hsa-mir-484 ; hsa-mir-186-5p ; hsa-mir-767-5p ; hsa-mir-5682 ; hsa-mir-3978 ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-570-3p ; hsa-mir-6871-3p ; hsa-mir-607 ; hsa-mir-516b-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-212-5p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-1910-5p ; hsa-mir-455-3p ; hsa-mir-29c-3p
Nearest miRNA
hsa-mir-12136/Upstream/1058589; hsa-mir-101-1/Downstream/5455696;
Nearest TSS
ENST00000473358/Upstream/20076; ENST00000527932/Downstream/5159;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/19231, chr1-CpG: 85/Downstream/18381
Upstream sequence
TTCCTGCCATTAAGGGTATTTAGGAGGAAAATTTGAGATGTCTTATTCTAATCTAGTAGACTACCCTTAAACATGACCTCCATCACAATTTACTGCTTAG
Downstream sequence
ATTCTCTAGTTACTCTCAATAGACTCTTAGGCCATTAGTTGGCCTGACTTTGCATGAATTCTGCCAGTATTTTACTCCATGAAAGCCAGTCTTCTTACCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate