VISDB Viral Integration Site DataBase

VIS ID

TVIS30005221

Fusion event

HIV-IPP integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.1

Reference genome

Start

End

46168557/45702885 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-222-3p ; hsa-mir-651-5p ; hsa-mir-6811-5p ; hsa-mir-6807-5p ; hsa-mir-6511b-5p ; hsa-mir-1258 ; hsa-mir-3152-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3159 ; hsa-mir-4252 ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-1273g-3p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-542-3p ; hsa-mir-4765 ; hsa-mir-1236-5p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-1228-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-4293 ; hsa-mir-508-5p ; hsa-mir-4279 ; hsa-mir-4291 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-5193 ; hsa-mir-1207-3p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-6513-3p ; hsa-mir-8062 ; hsa-mir-646 ; hsa-mir-1303 ; hsa-mir-182-5p ; hsa-mir-411-5p ; hsa-mir-193b-5p ; hsa-mir-6809-5p ; hsa-mir-31-5p ; hsa-mir-4696 ; hsa-mir-4463 ; hsa-mir-483-5p ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-6832-5p ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-1306-5p ; hsa-mir-3973 ; hsa-mir-552-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4310 ; hsa-mir-4740-3p ; hsa-mir-498 ; hsa-mir-7157-5p

Nearest miRNA

hsa-mir-12136/Upstream/1157333; hsa-mir-101-1/Downstream/5356952;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/15477, chr1-CpG: 39/Downstream/47676

Upstream sequence

ACTAAAATCTATTCATTTCAAAGCCATATAGAAAAATTAGCAACAGAAAGTGCCCTCAAAAAGTTCACTTTCTATATTAGATAAACTCAAATAGGATCAT

Downstream sequence

GGAGAAAGGAATTTGAAATGTCACCAAAGTTTAAAACTTGTCAGAAATGAGAATCAAAATCCTTATGCTTTACaacaagacatgaaagtccattcttgcc