Basic Information
VIS ID
TVIS30005223
Fusion event
HIV-MAST2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.1
Reference genome
GRCh37/hg19
Start
46285265/45819593 (Hg38)
End
46285265/45819593 (Hg38)
Orient
-
Location type
Intronic
Target gene
MAST2
miRNAs that regulate target gene
hsa-mir-18a-3p
Nearest miRNA
hsa-mir-12136/Upstream/1274041; hsa-mir-101-1/Downstream/5240244;
Nearest TSS
ENST00000473358/Upstream/15980; ENST00000488619/Downstream/93995;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/15445, chr1-CpG: 84/Downstream/312861
Upstream sequence
ataaatttagtaaagttgcaggatccaaagtcaacacacagagatcagtagtgtttctgtatgccaacagtgaacaatctgaaaaaatcaaaaaagtaac
Downstream sequence
cccatttacagtagctgcaaataaaatacctagggattaaccaaagagatgaaagatctctctaatgaaaactattaaacactgatgcaagaaattgaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate