Basic Information
VIS ID
TVIS30005225
Fusion event
HIV-UQCRH integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
46778686/46313014 (Hg38)
End
46778686/46313014 (Hg38)
Orient
-
Location type
Intronic
Target gene
UQCRH
miRNAs that regulate target gene
hsa-mir-4762-3p ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-3192-3p ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-7155-5p ; hsa-mir-4502 ; hsa-mir-1245b-3p ; hsa-mir-4778-5p ; hsa-mir-1272 ; hsa-mir-4463
Nearest miRNA
hsa-mir-12136/Upstream/1767462; hsa-mir-101-1/Downstream/4746823;
Nearest TSS
ENST00000473358/Upstream/3093; ENST00000472157/Downstream/27163;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/9650, chr1-CpG: 47/Downstream/27653
Upstream sequence
ccactaggatggctataataaagaagataacgagtgttgacgacaatgtggaaaagttggaaacctcatacgctgtcagtaaaagtgtaaattggtacag
Downstream sequence
ccactgtggaaaacatctggcagttcctcaaaaggctaaatatacagttaatatatgacacagcaattacactcgaagatatatacccaagagaaatgaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate