VISDB Viral Integration Site DataBase

VIS ID

TVIS30005233

Fusion event

HIV-RAB3B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p32.3

Reference genome

Start

End

52383252/51917580 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-375 ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-27b-3p ; hsa-mir-155-5p ; hsa-mir-452-5p ; hsa-mir-200b-3p ; hsa-mir-487a-3p ; hsa-mir-127-5p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-3163 ; hsa-mir-410-3p ; hsa-mir-3149 ; hsa-mir-6839-3p ; hsa-mir-411-5p ; hsa-mir-4775 ; hsa-mir-629-5p ; hsa-mir-4735-5p ; hsa-mir-590-3p ; hsa-mir-5096 ; hsa-mir-744-3p ; hsa-mir-6751-5p ; hsa-mir-6803-5p ; hsa-mir-197-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6835-5p ; hsa-mir-1273f ; hsa-mir-4716-5p ; hsa-mir-483-3p ; hsa-mir-335-3p ; hsa-mir-452-3p ; hsa-mir-4742-3p ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6841-3p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4279 ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-4740-3p ; hsa-mir-122-3p

Nearest miRNA

hsa-mir-12136/Upstream/81178; hsa-mir-101-1/Downstream/2136499;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/38313, chr1-CpG: 68/Downstream/72525

Upstream sequence

aagctctgctctctgcATTGCATCAAAGAAAGCAACATCTTTGTAGAGCTGACTCCTTTAAAAAAAAAAAGAGAGAAAGAGAGACAGAgagacagggtct

Downstream sequence

tattcttactctgtcacccagactggaatgcagtggcataattacagctcactgcaacctcaaattcttgggctcaagcaatcctcctgcctcagcctcc