Basic Information
VIS ID
TVIS30005244
Fusion event
HIV-USP24 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p32.3
Reference genome
GRCh37/hg19
Start
55625970/55160297 (Hg38)
End
55625970/55160297 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
USP24
miRNAs that regulate target gene
hsa-mir-196a-5p ; hsa-let-7d-5p ; hsa-mir-1226-3p ; hsa-mir-935 ; hsa-mir-193b-3p ; hsa-mir-181b-5p
Nearest miRNA
hsa-mir-12136/Upstream/1106143; hsa-mir-101-1/Downstream/65344;
Nearest TSS
ENST00000473358/Upstream/6380; ENST00000451250/Downstream/54816;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/119955, chr1-CpG: 133/Downstream/54495
Upstream sequence
TACATCTAAATTACCACTTCCATCTAAGTAAGAAAATATTTAAAACTTAGCTGATGAAGAAAGAGATAAACAATATTTGGCTGTCAAAGCCAAGAATACA
Downstream sequence
TTAGCAATGAGCTAAAATGACATCAGGCAGTTATCCAGATAGAATTTCTTCTTTTACACTTAATGCCAATTGTATAGGAAGGAGAGCGAGCTGTTATGGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate