Basic Information
VIS ID
TVIS30005251
Fusion event
HIV-ALG6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37/hg19
Start
63897110/63431439 (Hg38)
End
63897110/63431439 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1L
Target gene
ALG6
Nearest miRNA
hsa-mir-12132/Upstream/104455; hsa-mir-101-1/Downstream/1148408;
Nearest TSS
ENST00000473358/Upstream/3201; ENST00000480886/Downstream/15621;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/63289, chr1-CpG: 99/Downstream/161827
Upstream sequence
aagttcatcagttttctcccaaaactcagctgagattttgatagggactgagtcgattctgcatatcaatttgtggaatattgctttatttttttgagac
Downstream sequence
aaggtctcactttgttgcccagattggagtgcaatggtgtgatcttggctcactgcaacctctgcctcccaggctcaagcagtcttcccacctcagcccc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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