Basic Information
VIS ID
TVIS30005258
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37/hg19
Start
67464886/66999203 (Hg38)
End
67464886/66999203 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/370686; hsa-mir-11399/Downstream/1184315;
Nearest TSS
ENST00000473358/Upstream/40292; ENST00000637002/Downstream/54896;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/68403, chr1-CpG: 59/Downstream/54659
Nearby gene
SLC35D1(No orient, 129)
Upstream sequence
AAGCTACTCAGGAGCTTGGAAACCTGATAATGCAGTTGAAATACCCTGAAAACAGAAAGATTAGCACTTCCTTCCTTCTAATTTACCACAAGTATGCCAC
Downstream sequence
AAGACACTGGATATTCAGTCATACATACTATTCATAAAAGCATTTGTATATAAAACAGTATTTTCTACATATGGAGTCTCAATCACCTAACAGGATGCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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