Basic Information
VIS ID
TVIS30005260
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37/hg19
Start
67752453/67286770 (Hg38)
End
67752453/67286770 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/658253; hsa-mir-11399/Downstream/896748;
Nearest TSS
ENST00000473358/Upstream/54917; ENST00000441640/Downstream/20594;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/151738, chr1-CpG: 139/Downstream/142682
Nearby gene
IL12RB2(No orient, 20594)
Upstream sequence
ctcataacatcttttttgtatgagtgtctcttcaagtctcttgtccatttttcttttgagttatctgctgatagaagctcttgatatctctttgactcga
Downstream sequence
gccttttcttcaggccctctgctgttggttacatgggttaccactatctccatccattcttctaatgatatcttccaataaattgaagtccctaatttta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate