Basic Information
VIS ID
TVIS30005265
Fusion event
HIV-SLC44A5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
75915662/75449977 (Hg38)
End
75915662/75449977 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1L
Target gene
SLC44A5
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-101-1/Upstream/4382261; hsa-mir-11399/Downstream/1610166;
Nearest TSS
ENST00000473358/Upstream/290689; ENST00000473018/Downstream/161107;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/312853, chr1-CpG: 34/Downstream/164792
Upstream sequence
gtagtaccagctactcaggaggctgaggcaggagaatctcttgaatcagggaggcagaggttgcagtaagccaagatcatgccactgcactccagcctgg
Downstream sequence
tgacagagcaagactctatctcaaaaaaaaaaattaatcgcaggataatgcataatgatcaactttgtgagctttatttaattcaagaagaaaaatgaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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