VISDB Viral Integration Site DataBase

VIS ID

TVIS30005271

Fusion event

HIV-PRKACB integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p31.1

Reference genome

Start

End

84556527/84090844 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-23b-3p ; hsa-mir-93-5p ; hsa-mir-19b-3p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-203a-3p ; hsa-mir-106b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-20b-5p ; hsa-mir-520e ; hsa-mir-520f-3p ; hsa-mir-520a-3p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-519d-3p ; hsa-mir-520d-3p ; hsa-mir-513a-3p ; hsa-mir-636 ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-302e ; hsa-mir-513c-3p ; hsa-mir-548x-5p ; hsa-mir-3606-3p ; hsa-mir-3622a-3p ; hsa-mir-3622b-3p ; hsa-mir-1273e ; hsa-mir-3660 ; hsa-mir-548aj-5p ; hsa-mir-4526 ; hsa-mir-548aw ; hsa-mir-3692-3p ; hsa-mir-7158-3p ; hsa-mir-1468-3p ; hsa-mir-2277-3p ; hsa-mir-4539 ; hsa-mir-4724-5p ; hsa-mir-3120-3p

Nearest miRNA

hsa-mir-101-1/Upstream/7030642; hsa-mir-11399/Downstream/1042950;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/12266, chr1-CpG: 77/Downstream/207581

Upstream sequence

gtcaagcagtgtcacttcagctgcattctgtttgttaagtgagtcacttaaatgagtctgtatcaagggaagttgaattagattctgcactttgatggaa

Downstream sequence

ggagttagaaaaatttggggacatgtAGAAATCACATTGTACATCTTTCTCTGCAAGCCCAATCACTCCACTATTACTTTGGATCCCAACCCCTCCTGCT