Basic Information
VIS ID
TVIS30005273
Fusion event
HIV-CTBS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
85027903/84562220 (Hg38)
End
85027903/84562220 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1L
Target gene
CTBS
miRNAs that regulate target gene
hsa-mir-651-5p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-4267 ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-4660
Nearest miRNA
hsa-mir-101-1/Upstream/7502018; hsa-mir-11399/Downstream/571574;
Nearest TSS
ENST00000473358/Upstream/18018; ENST00000644179/Downstream/12201;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/55412, chr1-CpG: 48/Downstream/11922
Upstream sequence
tatgtattacagcacttctcaaacccattaatataattgttgttacaaatctccaagaggggcgtacagtatatagtgtttttctaaatatatttggcca
Downstream sequence
tggcacACGTGTGTATATTTTGCACACATGTGCATCTGTGTGTGTAATATTAACAGTTCCCAGGACAGACTAATATAAACACTGTTTAGGAAAGATAAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate