Basic Information
VIS ID
TVIS30005278
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
88919724/88454041 (Hg38)
End
88919724/88454041 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1D
Nearest miRNA
hsa-mir-101-1/Upstream/2096354; hsa-mir-11399/Downstream/5392791;
Nearest TSS
ENST00000473358/Upstream/124958; ENST00000436111/Downstream/76208;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1118492, chr1-CpG: 63/Downstream/8559
Nearby gene
PKN2-AS1(No orient, 83472)
Upstream sequence
AGAGAGGCCTGAAAGACATTCCAGGGCAACGGATAGGAGGCTGTCTGGGTTGTGCTGGAAAAAGCACCAAGATCAGAGCAAACAATGTGAGTTCCAGTCT
Downstream sequence
TACCTTGGCCACCAATCCTCTGCCTTGGATTCCTCTACTGCAAAAGGGTATTAGAATGCCTGTGAGGATCACAAGACCTCATGGATACAGAATGACATGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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