Basic Information
VIS ID
TVIS30005285
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
92104233/91638676 (Hg38)
End
92104233/91638676 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1D
Nearest miRNA
hsa-mir-101-1/Upstream/5280989; hsa-mir-11399/Downstream/2208156;
Nearest TSS
ENST00000473358/Upstream/125549; ENST00000461218/Downstream/73687;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/91577, chr1-CpG: 123/Downstream/246680
Nearby gene
TGFBR3(No orient, 41667)
Nearest cancer related gene
TGFBR3(TSG, No orient, 41667)
Upstream sequence
TTATAAggccgggcacagtggctcgtgcctgtaatctcagcactttgggaggtcaagatgggcagatcacctgaggtcgggagtttgagaccagcctgac
Downstream sequence
caacatggagaaaccctgtctctactaatacaaaattacccaggcttggtggtgcatgcctatcatcccagctactccggaggctgaggcaggagaatcg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate