Basic Information
VIS ID
TVIS30005288
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
92937629/92472072 (Hg38)
End
92937629/92472072 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1D
Nearest miRNA
hsa-mir-101-1/Upstream/6114385; hsa-mir-11399/Downstream/1374760;
Nearest TSS
ENST00000473358/Upstream/138830; ENST00000646852/Downstream/11882;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/172703, chr1-CpG: 494/Downstream/8237
Nearby gene
GFI1(No orient, 2689)
Nearest cancer related gene
GFI1(OG, No orient, 2689)
Upstream sequence
tatacctgtaacatgttatttcaaaaaTAAAATCTGAAGTAAATATGGCAGAATGGTGGGTACACTGATGTTTATTATTCTCTGCAATTTCCAGTATGCC
Downstream sequence
TAAAATGTTTTATTCAAAAAGTGATAACATTAAACTTCAGAAAAGACTTTTTCTCAATGATTGATAAGATTCCCAATAAAATACTAAGATTTCAATAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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