Basic Information
VIS ID
TVIS30005291
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
94411532/93945976 (Hg38)
End
94411532/93945976 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1D
Nearest miRNA
hsa-mir-101-1/Upstream/99065; hsa-mir-11399/Downstream/597726;
Nearest TSS
ENST00000473358/Upstream/36520; ENST00000439455/Downstream/61776;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/36065, chr1-CpG: 93/Downstream/291158
Nearby gene
GCLM(No orient, 36378)
Upstream sequence
gtcccagctacttgggaggctgaggcaggagaatcccttcaatctgggaggtggaggttgcagtgagccgagatagtgccactgcactccatcctgggtg
Downstream sequence
acagagcgagactccgtctcaaaaataaataaataaataaataaaAAGAACTGTCTATTAAAGTTTTCTAATTTTTTATTGGTTTAATTTTTACACTAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate