Basic Information
VIS ID
TVIS30005292
Fusion event
HIV-LOC729970 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
95406677/94941121 (Hg38)
End
95406677/94941121 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA1M
Target gene
LOC729970
Nearest miRNA
hsa-mir-101-1/Upstream/397342; hsa-mir-11399/Downstream/3104121;
Nearest TSS
ENST00000473358/Upstream/13093; ENST00000456582/Downstream/20204;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/13561, chr1-CpG: 29/Downstream/131574
Upstream sequence
ccacaccctgataactttaatccaaattacctcccaaaggcccctaccttcatcaacatatacattggggaattaagttcccaacatgaaatttggggga
Downstream sequence
cacattcaaaccatagcaCTAACACTAACTCTCAGTTATTTATCTTATACCCCAGTTATTTGTGTATTCTTATCTTGGCATGTATGAGTTAAACCACCGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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