Basic Information
VIS ID
TVIS30005300
Fusion event
HIV-CDC14A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
100978706/100513150 (Hg38)
End
100978706/100513150 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1E
Target gene
CDC14A
miRNAs that regulate target gene
hsa-mir-503-5p ; hsa-mir-424-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-628-3p ; hsa-mir-630 ; hsa-mir-301a-3p
Nearest miRNA
hsa-mir-101-1/Upstream/231842; hsa-mir-11399/Downstream/7384073;
Nearest TSS
ENST00000473358/Upstream/27153; ENST00000315033/Downstream/24987;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/159807, chr1-CpG: 146/Downstream/25862
Upstream sequence
tgaaataaaaaaTAAAAAATACTTTCAGTATTGTGAAACCACAGTTATGGAAATAAGTATCAATGCACACATTTTATGTGTTAATTTGTGAGCAATACAA
Downstream sequence
AAACTGGAAACTCTATTACAAAGGCTTAAAGAGACATAGGAGTACAGAGGCAGTTATGGGTGTATTTATTTTTCCCCAGTGTTGTATTTGTTCATTAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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