Basic Information
VIS ID
TVIS30005303
Fusion event
HIV-DPH5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
101459302/100993746 (Hg38)
End
101459302/100993746 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1E
Target gene
DPH5
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-769-5p ; hsa-let-7a-5p
Nearest miRNA
hsa-mir-101-1/Upstream/712438; hsa-mir-11399/Downstream/6903477;
Nearest TSS
ENST00000473358/Upstream/31918; ENST00000414686/Downstream/1404;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/97494, chr1-CpG: 31/Downstream/32015
Upstream sequence
CAAAAAAATTCTGTcagtgctatccaatagaaatataaatgaagccatatatagaatcaagttttctagtagccatattaacaaaaaagtttgtaaaaag
Downstream sequence
gcaatttttttttttaagacagtctcactctgttgcccaggctgcagtacagtggcgtgatattggttcactgcaacctctgcctcctgggttcaagcaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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