Basic Information
VIS ID
TVIS30005304
Fusion event
HIV-LOC102606465 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
101500630/101035074 (Hg38)
End
101500630/101035074 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA1E
Target gene
LOC102606465
Nearest miRNA
hsa-mir-101-1/Upstream/753766; hsa-mir-11399/Downstream/6862149;
Nearest TSS
ENST00000473358/Upstream/8986; ENST00000416329/Downstream/28537;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/8950, chr1-CpG: 26/Downstream/201155
Upstream sequence
aatgggataagtaaactgtatatctaaaggcctgcaatatagtgcacaattaacattagctagtattactACCAAAAATATTCTCTAGCTAGCTGGTTTT
Downstream sequence
ACAGAATTTCTGTGTGTTCTAGGTAAAATTGCAGTTTAGGACCATCATCCATCCCTCCTGACACCAAACAAAAAGTGAATTTGTAATTAGAATATTTAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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