Basic Information
VIS ID
TVIS30005306
Fusion event
HIV-LOC101928334 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
101616557/101151001 (Hg38)
End
101616557/101151001 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1E
Target gene
LOC101928334
Nearest miRNA
hsa-mir-101-1/Upstream/869693; hsa-mir-11399/Downstream/6746222;
Nearest TSS
ENST00000473358/Upstream/68547; ENST00000475289/Downstream/85527;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/124877, chr1-CpG: 26/Downstream/85228
Nearby gene
LOC102606465(No orient, 63622)
Upstream sequence
CAGCCAGGTGAGTTACGTTGGGATCAAAGATTATGTGATCGCATGTATGTGTGTTTCTTTGTCATATAAGTTATACTCTGGCTTATCACTGCGTGATAAC
Downstream sequence
TTTACATCAACTTCCCACATTCTTATCTTTTGAATGATATGTATGGTGAGCTGACCAGTGGGTTTTAAGATGTAGTAGCAGAAGAATCCAACAGAAAACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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