Basic Information
VIS ID
TVIS30005308
Fusion event
HIV-VAV3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
End
108476544/107933922 (Hg38)
Orient
+
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-186-5p ; hsa-mir-98-5p ; hsa-mir-149-5p ; hsa-mir-27a-5p ; hsa-mir-4290 ; hsa-mir-378g ; hsa-mir-939-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4667-3p ; hsa-mir-6779-3p ; hsa-mir-28-3p ; hsa-mir-4432 ; hsa-mir-185-3p ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-6787-5p ; hsa-mir-4492 ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-4508 ; hsa-mir-5089-3p ; hsa-mir-500a-3p ; hsa-mir-760 ; hsa-mir-8072 ; hsa-mir-3194-3p ; hsa-mir-6804-3p ; hsa-mir-3960 ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-4793-3p ; hsa-mir-3130-3p ; hsa-mir-6741-3p ; hsa-mir-455-5p ; hsa-mir-6079 ; hsa-mir-6763-3p ; hsa-mir-513b-5p ; hsa-mir-6789-3p ; hsa-mir-671-5p ; hsa-mir-6828-5p ; hsa-mir-2115-5p ; hsa-mir-6886-3p ; hsa-mir-938 ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-6846-3p ; hsa-mir-7706 ; hsa-mir-4680-5p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-4315 ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6784-5p ; hsa-mir-6752-3p ; hsa-mir-4532 ; hsa-mir-5587-3p ; hsa-mir-4707-5p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-7113-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-525-3p ; hsa-mir-524-3p ; hsa-mir-4428 ; hsa-mir-4511 ; hsa-mir-3133 ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-4665-3p ; hsa-mir-4436b-5p ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-7114-3p ; hsa-mir-1180-5p ; hsa-mir-3664-3p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-5088-3p ; hsa-mir-5000-3p ; hsa-mir-4436a ; hsa-mir-4717-3p ; hsa-mir-4802-3p ; hsa-mir-4435 ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-6743-3p ; hsa-mir-3670 ; hsa-mir-6511b-3p ; hsa-mir-6511a-3p ; hsa-mir-4733-3p ; hsa-mir-1226-3p ; hsa-mir-4482-3p ; hsa-mir-4670-3p ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-138-2-3p ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-2117 ; hsa-mir-130b-5p ; hsa-mir-148a-5p ; hsa-mir-3912-5p ; hsa-mir-6842-3p ; hsa-mir-647 ; hsa-mir-1226-5p ; hsa-mir-6771-5p ; hsa-mir-425-3p ; hsa-mir-6084 ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-4529-5p ; hsa-mir-196a-3p ; hsa-mir-7160-5p ; hsa-mir-214-5p ; hsa-mir-4721 ; hsa-mir-3616-3p ; hsa-mir-4539 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6078 ; hsa-mir-6748-3p ; hsa-mir-6832-3p ; hsa-mir-6785-3p ; hsa-mir-6733-3p ; hsa-mir-892c-5p ; hsa-mir-15a-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-3127-5p ; hsa-mir-199b-5p ; hsa-mir-199a-5p ; hsa-mir-1825 ; hsa-mir-6798-5p ; hsa-mir-1250-3p ; hsa-mir-6783-5p ; hsa-mir-3178 ; hsa-mir-4634 ; hsa-mir-6499-5p ; hsa-mir-6892-3p ; hsa-mir-6840-5p ; hsa-mir-6865-3p ; hsa-mir-6856-3p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-6499-3p ; hsa-mir-498 ; hsa-mir-561-5p ; hsa-mir-499a-5p
Nearest miRNA
hsa-mir-101-1/Upstream/36618; hsa-mir-11399/Downstream/1664971;
Nearest cancer related gene
VAV3(OG, No orient, 0)
Upstream sequence
aaaaaaaaaaaTTAAATCTCATTACTTGAAAATTGCGATTTTAAAAAGCATGCTATCTGTAGGTAAAGCAATGTTTCCACAGTCATAAGAGGAGTACAGA
Downstream sequence
AGTTACAGTTTCTTCTTTGGCCCTTAGCAGGAGCTTGGCTCACAATAGTGATCAGACCAAAAGATGAAAGCACTACCACTGGTCTCTGGCCAGCTTTGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate