Basic Information
VIS ID
TVIS30005309
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
108623225/108080603 (Hg38)
End
108623225/108080603 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/183299; hsa-mir-11399/Downstream/1518290;
Nearest TSS
ENST00000473358/Upstream/8232; ENST00000564063/Downstream/112215;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/115184, chr1-CpG: 25/Downstream/112002
Nearby gene
SLC25A24(No orient, 54119)
Upstream sequence
tcatcatgaactttggcttgccatccttctcctccatcttttcatcacctgcttggggaccagcacccacacagactgtgtttccacatcctggcctcca
Downstream sequence
cttccttgatctcaactccagtgaccttcatcaccaccccaccaaagacacctacacccaagaccacactcacactttgtcatcattcagaacatcttcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate