Basic Information
VIS ID
TVIS30005312
Fusion event
HIV-PSMA5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
109956117/109413495 (Hg38)
End
109956117/109413495 (Hg38)
Orient
-
Location type
Intronic
Target gene
PSMA5
miRNAs that regulate target gene
hsa-mir-100-5p ; hsa-mir-6505-3p ; hsa-mir-192-3p ; hsa-mir-4709-3p ; hsa-mir-3185 ; hsa-mir-6800-3p
Nearest miRNA
hsa-mir-101-1/Upstream/1516191; hsa-mir-11399/Downstream/185398;
Nearest TSS
ENST00000473358/Upstream/1210; ENST00000475497/Downstream/1870;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/15223, chr1-CpG: 68/Downstream/12531
Upstream sequence
AATTTCCACATATTACATCCCTAAGCATCCCTTTAGCACTCTTTGTAGACGATGATACATTTTCAAACGAAGCAAATACTAATGCCCCAACCTGGGAAAC
Downstream sequence
AAGGAAAAGAAAATCACCTCACTATGGACTACAGTGGAGGACTCTCGAATAAATCAAAAGCCTTTTGCCTCTCTGTCCCAAACACAAAGCAACTAGTTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate