Basic Information
VIS ID
TVIS30005314
Fusion event
HIV-RBM15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
110890870/110348248 (Hg38)
End
110890870/110348248 (Hg38)
Orient
+
Location type
Intronic
Target gene
RBM15
Nearest miRNA
hsa-mir-101-1/Upstream/749281; hsa-mir-11399/Downstream/2113522;
Nearest TSS
ENST00000473358/Upstream/8782; ENST00000609909/Downstream/21906;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/8070, chr1-CpG: 67/Downstream/59022
Nearby gene
RBM15(No orient, 1567)
Nearest cancer related gene
RBM15(OG, No orient, 0)
Upstream sequence
TGTCCTTTAAAATTTTGACATTTGCTGTTAACCTTGGCCTTTACCCTTAGTCATGATTTAATGATGCAGGAGGACTTACTGCTGTAAAAACGTTGCTTGT
Downstream sequence
TTACGAATACTGATTTCTAAACTTCAGAGTTAAGACATTACAGTGTATAACAGCAACAAAAGTATGCCATCAGATTGTGAATGATACATATTTTAGCCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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