Basic Information
VIS ID
TVIS30005315
Fusion event
HIV-RBM15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
110891380/110348758 (Hg38)
End
110891380/110348758 (Hg38)
Orient
-
Location type
Intronic
Target gene
RBM15
Nearest miRNA
hsa-mir-101-1/Upstream/749791; hsa-mir-11399/Downstream/2113012;
Nearest TSS
ENST00000473358/Upstream/9292; ENST00000609909/Downstream/21396;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/8580, chr1-CpG: 67/Downstream/58512
Nearby gene
RBM15(No orient, 2077)
Nearest cancer related gene
RBM15(OG, No orient, 0)
Upstream sequence
AAGACATCCAGTATCTAGTAACTACAATAGCTGATCTATACTAGCTACTTTTTCCACAAGATAGAGCTCCTTGGATTGTTTTGCTAGGCAGCTTATGTAC
Downstream sequence
CCATACTTTGATATAGTAAAAGGGAAAAAATGAAGTACAGTGGAATTTTTCAGGTTCTCAGTGTGTCATAAGAATTTTTAAAACAGCTGGTTATGAGATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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