Basic Information
VIS ID
TVIS30005317
Fusion event
HIV-LOC107985174 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
111185021/110642399 (Hg38)
End
111185021/110642399 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107985174
Nearest miRNA
hsa-mir-101-1/Upstream/1043432; hsa-mir-11399/Downstream/1819371;
Nearest TSS
ENST00000473358/Upstream/10925; ENST00000471220/Downstream/14641;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/34835, chr1-CpG: 199/Downstream/31223
Upstream sequence
ggctggagtgcaatggcactatgttggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgggattatagg
Downstream sequence
cacccaccatcatgcctggctaatttttgtatttttgtagagatggaatttcaccatgaccaagctggtcttaaactcctgacctcaggtgattcacttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate