Basic Information
VIS ID
TVIS30005319
Fusion event
HIV-CHI3L2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
111776958/111234336 (Hg38)
End
111776958/111234336 (Hg38)
Orient
-
Location type
Intronic
Target gene
CHI3L2
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-101-1/Upstream/1635369; hsa-mir-11399/Downstream/1227434;
Nearest TSS
ENST00000473358/Upstream/3570; ENST00000472825/Downstream/680;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/29655, chr1-CpG: 36/Downstream/36453
Upstream sequence
cagtaaaacagattttattcaggaaatattgaaacggggaaaaagacctcagtatggtactgggttctattccaaaggcagcaaaggcaagtgaggaaat
Downstream sequence
atagccaaagagcacgctaggggcaatcagtggatggaaaatcataaagaggaaacactggggctagagggatggattcttgctaaactgattcaacagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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