VISDB Viral Integration Site DataBase

VIS ID

TVIS30005325

Fusion event

HIV-LRIG2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p13.2

Reference genome

Start

End

113667325/113124703 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-6875-3p ; hsa-mir-4531 ; hsa-mir-3190-3p ; hsa-mir-4516 ; hsa-mir-5703 ; hsa-mir-4434 ; hsa-mir-4795-5p ; hsa-mir-34a-3p ; hsa-mir-4503 ; hsa-mir-1200 ; hsa-mir-6792-5p ; hsa-mir-378a-5p ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-4522 ; hsa-mir-1236-3p ; hsa-mir-338-3p ; hsa-mir-4530 ; hsa-mir-4501 ; hsa-mir-5586-5p ; hsa-mir-3908 ; hsa-mir-6838-5p ; hsa-mir-8066 ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-497-5p ; hsa-mir-4684-5p ; hsa-mir-3163 ; hsa-mir-4282 ; hsa-mir-548c-3p ; hsa-mir-758-3p ; hsa-mir-8070 ; hsa-mir-1273e ; hsa-mir-6807-5p ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4433a-3p ; hsa-mir-8485 ; hsa-mir-377-3p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-6731-3p ; hsa-mir-888-3p ; hsa-mir-7977 ; hsa-mir-4266 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6089 ; hsa-mir-383-3p ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-5684 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-5698 ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-143-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6499-3p ; hsa-mir-6778-3p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6890-3p ; hsa-mir-1288-5p ; hsa-mir-423-3p ; hsa-mir-6786-5p ; hsa-mir-25-5p ; hsa-mir-6087 ; hsa-mir-5186 ; hsa-mir-3192-5p ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-4679 ; hsa-mir-6761-5p ; hsa-mir-4251 ; hsa-mir-4329 ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-3200-5p

Nearest miRNA

hsa-mir-101-1/Upstream/242574; hsa-mir-1182/Downstream/3435321;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/51065, chr1-CpG: 21/Downstream/74148

Upstream sequence

AAGAATCCCAGGCTTGACCAACTGGTACCAGGTCAAAGATTTTTGTATTCTTGTGAATTTTTTTTTTTGTCCCTATTGCCCAGGGATGTCATTGTAAATA

Downstream sequence

TATGTGCATTTATAAATAATTTTTGTATTCATTGACCATATGTGTTGGCTGCAATGTAAATATTTTTGATATGCCAAAATTATATGTAATATCCAGTTAT