Basic Information
VIS ID
TVIS30005328
Fusion event
HIV-HIPK1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
114515443/113972821 (Hg38)
End
114515443/113972821 (Hg38)
Orient
-
Location type
Intronic
Target gene
HIPK1
miRNAs that regulate target gene
hsa-mir-590-3p ; hsa-mir-26b-5p ; hsa-mir-19b-3p ; hsa-mir-877-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-92a-3p ; hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-mir-1260b ; hsa-mir-548e-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-548ao-5p ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-5689 ; hsa-mir-766-5p ; hsa-mir-1255a ; hsa-mir-1255b-5p ; hsa-mir-5004-5p ; hsa-mir-7154-3p ; hsa-mir-7847-3p ; hsa-mir-6744-5p ; hsa-mir-6894-5p ; hsa-mir-765 ; hsa-mir-6080 ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-3163 ; hsa-mir-4646-3p ; hsa-mir-4433b-5p ; hsa-mir-3655 ; hsa-mir-3065-5p ; hsa-mir-4762-5p ; hsa-mir-3529-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p
Nearest miRNA
hsa-mir-101-1/Upstream/1090692; hsa-mir-1182/Downstream/2587203;
Nearest TSS
ENST00000473358/Upstream/9381; ENST00000393300/Downstream/6570;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/42544, chr1-CpG: 145/Downstream/179693
Upstream sequence
GGTGAGTTGAGTCACCAGTTATTAACTTGCAGGAGTGGGGAACCCTATGATCTCTTGATTCTCCCTCTTCCTGTCATACTTACAAGCAAAATGCTGTTAC
Downstream sequence
CTGAGCCAGATTAGGATCTATCTTGCTAAGAGGCAGAAGGAGGGGTGGCTGATTTCTGACAGCATTCAATGCCAGTGTGGGAGATTATGTGCTATACCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate