Basic Information
VIS ID
TVIS30005329
Fusion event
HIV-TRIM33 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
115032973/114490351 (Hg38)
End
115032973/114490351 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRIM33
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-19b-3p ; hsa-mir-744-5p ; hsa-let-7a-3p ; hsa-mir-3923 ; hsa-mir-4477a ; hsa-mir-548aw ; hsa-mir-633 ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-325 ; hsa-mir-1244 ; hsa-mir-1278 ; hsa-mir-455-5p ; hsa-mir-19a-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-642a-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-5692a ; hsa-mir-6864-3p ; hsa-mir-578 ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-6873-3p ; hsa-mir-6505-3p ; hsa-mir-942-5p ; hsa-mir-6845-3p ; hsa-mir-499b-5p ; hsa-mir-526b-5p ; hsa-mir-629-5p
Nearest miRNA
hsa-mir-101-1/Upstream/1608222; hsa-mir-1182/Downstream/2069673;
Nearest TSS
ENST00000473358/Upstream/27115; ENST00000468191/Downstream/20809;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/335788, chr1-CpG: 129/Downstream/20088
Upstream sequence
cagagaagatatactaatggtcaataagtgcaaaagaaaatgctcaacgtcattagccacaaaagaaatgcaaatcaaaaccacaatgaaatactatgtc
Downstream sequence
acacccaccaggatagctacaataaaaaagataacaattgttggcaacattatagagaaactggaaccctcatacatattgctgatggtaaagaaaaatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate