Basic Information
VIS ID
TVIS30005330
Fusion event
HIV-DENND2C integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
115134358/114591737 (Hg38)
End
115134358/114591737 (Hg38)
Orient
+
Location type
Intronic
Target gene
DENND2C
miRNAs that regulate target gene
hsa-mir-122-5p ; hsa-mir-6768-5p ; hsa-mir-8485 ; hsa-mir-4276 ; hsa-mir-143-5p ; hsa-mir-6499-3p ; hsa-mir-5190 ; hsa-mir-570-3p ; hsa-mir-510-3p ; hsa-mir-3941 ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-1228-3p ; hsa-mir-127-5p ; hsa-mir-25-3p ; hsa-mir-25-5p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-377-5p ; hsa-mir-4325 ; hsa-mir-4459 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4786-3p ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-7703 ; hsa-mir-7843-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p
Nearest miRNA
hsa-mir-101-1/Upstream/1709608; hsa-mir-1182/Downstream/1968287;
Nearest TSS
ENST00000473358/Upstream/3180; ENST00000468191/Downstream/33588;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/80094, chr1-CpG: 65/Downstream/77881
Upstream sequence
tgtcttttcctttatggtctctgctctttgtgccgtatttttaagaaccccaccactgttttattgacataaaatattttcttctattcttttaaaaata
Downstream sequence
ttttcaaaagctttgcttttaacatttaagtctttaaattcactggaattaattttctgtatagtgtgaggtgtagatccatattcatttttttcatata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate