Basic Information
VIS ID
TVIS30005332
Fusion event
HIV-CD2-LCR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
117317107/116774485 (Hg38)
End
117317107/116774485 (Hg38)
Orient
-
Location type
Intronic
Target gene
CD2-LCR
Nearest miRNA
hsa-mir-101-1/Upstream/102668; hsa-mir-1182/Downstream/320158;
Nearest TSS
ENST00000473358/Upstream/20018; ENST00000496699/Downstream/135046;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/106486, chr1-CpG: 126/Downstream/135096
Nearby gene
CD2(No orient, 5256)
Upstream sequence
cccacttcaagatgtactataaagctacagtaatcaaaatagtatggtattggtgaaagaagagacaaatagatcaaatggaacagaatagagagccaga
Downstream sequence
gaaacccatataaatttcatcgtcttgtccaagcttgtccaaccctcagcccgcgggcaccatgcagctcaggatggctttgaatgtggcccgacacaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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