Basic Information
VIS ID
TVIS30005336
Fusion event
HIV-SRGAP2D integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
120769591/144041387 (Hg38)
End
120769591/144041387 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
SRGAP2D
Nearest miRNA
hsa-mir-101-1/Upstream/26946659; hsa-mir-1182/Downstream/1809200;
Nearest TSS
ENST00000473358/Upstream/69422; ENST00000613775/Downstream/44241;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/66386, chr1-CpG: 228/Downstream/35089
Nearby gene
FAM72B(No orient, 69414)
Upstream sequence
GAGAATCATTATTTCTGGGTATGTTCTGAGAAGGAAGATTTCTACTTGGATATATTTTACCCCTGGGCATGTCCAGGTTATAAGGCCCAGGTAGATAATA
Downstream sequence
CAGTTCTAAAGACTCAGGGTTTCTCTACTGTCTCAGTAACTCGCCTCCTGTTTCAGGAGGGCCAGAAGCAGCTGCTGGTCACTGCCAAGCAGACAGGACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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