Basic Information
VIS ID
TVIS30005342
Fusion event
HIV-SEC22B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
145116496/148772029 (Hg38)
End
145116496/148772029 (Hg38)
Orient
+
Location type
UTR3
Fragile sites / regions
FRA1F
Target gene
SEC22B
Nearest miRNA
hsa-mir-101-1/Upstream/383666; hsa-mir-1182/Downstream/1720316;
Nearest TSS
ENST00000473358/Upstream/23135; ENST00000610852/Downstream/36152;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/22980, chr1-CpG: 41/Downstream/36492
Upstream sequence
ATGGCCTTTTAAACAAGACTCCAGTATGTGAAAGTTAATTGCTGTGCTCCACAGATCTTGTCTATTGGCCCCTGTAGAAAGTTAACCTTTGTTGTTTTCC
Downstream sequence
TTTTATAATTTGCTTATTGCACAATTGCTTTAGGGTAAGTGAATTATATTAAGATGCCTTGAAATTATAGCACTCCTTGATTAAGAAGCTAAAATGTTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate