VISDB Viral Integration Site DataBase

VIS ID

TVIS30005345

Fusion event

HIV-LIX1L integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.1

Reference genome

Start

End

145479262/145955822 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-93-5p ; hsa-mir-503-5p ; hsa-mir-100-5p ; hsa-let-7a-5p ; hsa-mir-665 ; hsa-mir-510-5p ; hsa-mir-25-5p ; hsa-mir-5192 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6087 ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-1247-3p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4314 ; hsa-mir-4695-5p ; hsa-mir-1257 ; hsa-mir-3650 ; hsa-mir-4790-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-1298-3p ; hsa-mir-4693-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-4486 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-6818-3p ; hsa-mir-4684-5p ; hsa-mir-4662a-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-4755-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-6732-3p ; hsa-mir-548c-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p

Nearest miRNA

hsa-mir-101-1/Upstream/105177; hsa-mir-1182/Downstream/2378657;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/28318, chr1-CpG: 46/Downstream/1784

Upstream sequence

GTGTTACCTGGAGAGCCTCTGCTTTGGCTCCCAAACTGGACATCCTGTAAAAACTTCCATTTCCTTAGCAAGGATGAGGGAACAAGGGGATTGTACTGAC

Downstream sequence

AAAGGGCAATTAATCAGGCTTCACACTTCGTGGTGATTTTCTTTCCTATCTCCCCACCTCCCATCGCAGTCTTTCTCATTATTCTTGAGTTTCTCATTTC