VISDB Viral Integration Site DataBase

VIS ID

TVIS30005350

Fusion event

HIV-ANP32E integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.2

Reference genome

Start

End

150199347/150227015 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-1-3p ; hsa-let-7b-5p ; hsa-mir-877-3p ; hsa-mir-548t-3p ; hsa-mir-548aa ; hsa-mir-548ap-3p ; hsa-mir-548as-3p ; hsa-mir-548at-3p ; hsa-mir-548ay-3p ; hsa-mir-6732-3p ; hsa-mir-590-3p ; hsa-mir-4775 ; hsa-mir-3653-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-4668-5p ; hsa-mir-3658 ; hsa-mir-548at-5p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-4735-5p ; hsa-mir-195-3p ; hsa-mir-3973 ; hsa-mir-16-2-3p ; hsa-mir-5684 ; hsa-mir-6715a-3p ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-4433b-5p ; hsa-mir-4433a-5p ; hsa-mir-4797-3p ; hsa-mir-16-1-3p ; hsa-mir-6834-3p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-6505-5p ; hsa-mir-2116-5p ; hsa-mir-5002-5p ; hsa-mir-5584-3p ; hsa-mir-6874-3p ; hsa-mir-148b-5p ; hsa-mir-3168 ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-124-3p ; hsa-mir-497-3p ; hsa-mir-206 ; hsa-mir-613 ; hsa-mir-506-3p ; hsa-mir-7856-5p ; hsa-mir-4477b ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-561-3p ; hsa-mir-548l ; hsa-mir-548n ; hsa-mir-665 ; hsa-mir-1273e ; hsa-mir-6771-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4635 ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-216b-5p ; hsa-mir-7977 ; hsa-mir-6818-3p ; hsa-mir-4684-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-1277-5p ; hsa-mir-5011-5p

Nearest miRNA

hsa-mir-101-1/Upstream/1838652; hsa-mir-1182/Downstream/265330;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/76127, chr1-CpG: 97/Downstream/7608

Upstream sequence

CACAGCGATACTTTTTTTTTTTTAAGATTTCTGTTTCACAACATTCCTAGTTATTCCTACAAACCAAATGCGAGAAGTATGGCTTCTAAATACTGGTATC

Downstream sequence

CAATATATATCTAGATTCTCATGAAAATATTGCATGCACTAAAGTTTGTTTTACTTTGTGAACACTTCAAAACTTTGCTTGTGagatgttggagaggctg